This post contains affiliate links. As an Amazon associate I earn qualifying purchases. Click here for more about this policy.

Healthy Carrot Apple Flax Muffins are made low calorie, gluten free and dairy free with nutrient dense ingredients. These nutrient packed muffins are delicious and great for a portable snack!

Healthy Carrot Apple Flax Muffins are made low calorie, gluten free and dairy free with nutrient dense ingredients.
Save this recipe!
Get this sent to your inbox, plus get new recipes!

Muffins always make Monday better, right? I like to call Monday “muffin Monday” because the on Monday you get to feast on all the muffins from the weekend’s baking extravaganza. 

If you’ve been around here from the beginning of Skinny Fitalicious then you know I’m a lover of all things baking with carrots from raw carrot cake to Paleo carrot cake cookies and almond flour carrot cake. You could say I’m just a little obsessed with carrots! They’re not only tasty, but just so easy to sneak into baked goods!

Healthy Carrot Apple Flax Muffins are made low calorie, gluten free and dairy free with nutrient dense ingredients.

Healthy Carrot Apple Flax Muffins

For these healthy carrot muffins, I did a spin on the almond flour morning glory muffins that are in my low-calorie cookbook.

This version is made with gluten free flour and are lightly sweetened with cinnamon, applesauce and a bit of coconut sugar. They’re also incredibly dense from the flaxseed which I love putting in baked good for healthy fat.

Here’s a few more reason why I love these muffins!

  • Low Calorie – Calories matter for weight loss, but the numbers are not everything. You always want calories to be compromised of the nutrient dense ingredients which this recipe is. These muffins are 180 calories each!
  • Gluten Free – The ingredients in this recipe are gluten free.
  • Dairy Free – There is no dairy in this recipe.
  • Higher Protein – Each muffin has 3 grams of protein from the egg whites and flax meal. We always want to include protein in baked goods to offset the blood sugar response from the sugar.
  • High Fiber – Each muffin has 4 grams of fiber. Fiber is proven to aid in weight loss and hormone balance. I talk about the importance of fiber in this free weight loss class.
ingredients measured out for carrots and apples

Ingredients For Muffins with Carrots and Apples

Here’s what you need to make gluten free carrot apple muffins. You will also need a muffin pan this is the one I use, avocado oil spray and large mixing bowl.

step by step illustration for apple carrot muffins

How To Bake Low Calorie Muffins with Carrots and Apples

These Healthy Carrot Apple Flax Muffins are super simple to make and kids will love helping you bake them too. Here’s how you make them!

Step one is preheating the oven to 350 F and preparing a muffin tin. You can use muffin liners or spray the muffin cavities with avocado oil spray or olive oil spray.

Step two is mixing the blending the extra virgin olive oil, applesauce, egg whites and cinnamon using a standing mixer or hand mixer. You will blend until the egg whites become frothy and have bubbles.

Next add the coconut sugar, flax meal and baking powder while you continue to mix. Then fold in the flour to the mixture slowly while continuing to mix the ingredients on a low speed.

Last fold the apples and carrots into the batter and spoon the batter into the muffin cavities about 3/4 of the way full. Bake in the oven 25 to 30 minutes until a toothpick can be removed clean from the center. Cool in the pan 10 minutes before removing from the baking pan.

Healthy Carrot Apple Flax Muffins are made low calorie, gluten free and dairy free with nutrient dense ingredients.

How To Store Your Healthy Muffins

These muffins should be stored in the refrigerator or in the freezer in a container, in a storage bag or individually wrapped in plastic wrap. You can store them in the refrigerator up to 7 days or in the freezer up to 60 days. If you freezer the muffins, thaw them by removing from the freezer and placing in the refrigerator the night before you plan to eat them.

Substitutions For This Carrot Apple Flax Muffin Recipe

Here are the substitutions I recommend for this recipe. As always, substitutions you make will change the nutrition data you see in the recipe card below.

  • Apples – You can substitute shredded zucchini for the apples. If you do this, you will lose the sweetness that the apples add to the muffins. I recommend you 1 or 2 tablespoons of maple syrup to keep them tasting good!
  • Carrots – You could omit these if they don’t work for you.
  • Extra Virgin Olive Oil – Olive oil can be baked with at temperatures 350 F and below. You can also use coconut oil or avocado oil as substitutes.
  • Applesauce – I have not tried substituting the applesauce in this recipe, but the batter does need this liquid to keep the muffins moist. You could consider using bananas or avocado to replace the applesauce, however, I have not tested this.
  • Egg Whites – You can substitute 1 whole egg for the 2 egg whites. If you do that, you will decrease the protein slightly as 2 egg whites have more protein than 1 whole egg.
  • Gluten Free Flour – I have not tested this recipe with other flours and I never bake with white or whole wheat flours. The only flour that can generally be swapped one-for-one with gluten free baking flour is oat flour. Always make sure you measure flours properly for baking too!
  • Flax Meal – The flax meal is critical to the recipe as it binds the batter and there is no replacement for this.
  • Coconut Sugar – Any sugar could be substituted for the coconut sugar. I prefer coconut sugar as it is slightly lower on the glycemic index than other sugar. Monkfruit would also work and will reduce the sugar content more if that is a concern for you. As a note, maple syrup and honey would not work.
Healthy Carrot Apple Flax Muffins are made low calorie, gluten free and dairy free with nutrient dense ingredients.
Healthy Carrot Apple Flax Muffins are made low calorie, gluten free and dairy free with nutrient dense ingredients.
5 from 3 votes
Servings: 10 muffins

Healthy Carrot Apple Flax Muffins

Healthy Carrot Apple Flax Muffins are made low calorie, gluten free and dairy free with nutrient dense ingredients. These nutrient packed muffins are delicious and great for a portable snack! Low Calorie + Gluten Free
Prep: 10 minutes
Cook: 30 minutes
Resting Time: 5 minutes
Total: 45 minutes
Save this recipe?
Get this sent to your inbox, plus get new recipes from us every week!

Ingredients 

Instructions 

  • Preheat oven 350 F. Line a muffin tin with muffin liners or spray with avocado oil spray or olive oil spray.
  • In a food processor, add the carrots and apples. Pulse a few times until shredded. Set aside.
  • In a standing mixer or using a hand mixer, add egg whites, olive oil, applesauce and cinnamon. Mix until eggs become frothy.
  • Add sugar, baking powder and flax and mix to combine. Then slowly add flour to the mixture while mixing on low.
  • Fold in the apples and shredded carrots into the batter.
  • Spoon batter into muffin cavities 3/4 full. Bake at 350 F 25 to 30 minutes until a toothpick can be removed clean. Remove from the oven and cool muffins in the pan 10 minutes before removing from the baking pan.
  • Store in the refrigerator in a sealed container up to 7 days or in the freezer up to 60 days.

Video

Notes

Nutrition

Serving: 1muffin, Calories: 180kcal, Carbohydrates: 27g, Protein: 3g, Fat: 8g, Saturated Fat: 1g, Polyunsaturated Fat: 2g, Monounsaturated Fat: 4g, Sodium: 32mg, Potassium: 193mg, Fiber: 4g, Sugar: 10g, Vitamin A: 2162IU, Vitamin C: 3mg, Calcium: 58mg, Iron: 1mg

Nutrition information is automatically calculated, so should only be used as an approximation.

Like this? Leave a comment below!
Avatar photo

Megan

Megan is a nutritionist who coaches women 35+ lose weight sustainably. She is the author of the Low Calorie Cookbook, fitness instructor, host of the Dish On Ditching Diets Podcast and creator of Skinny Fitalicious where you get lighter, higher protein recipes. Follow Megan on Facebook, Pinterest, YouTube and Instagram for the latest updates.

You May Also Like

5 from 3 votes

Leave a comment

Your email address will not be published. Required fields are marked *

Recipe Rating




32 Comments

  1. Sam @ PancakeWarriors says:

    Yummo I love how nourishing these are!! perfect for all those leftover carrots!!

    1. Megan says:

      Thanks girl!

  2. Sarah @ Making Thyme for Health says:

    These muffins look like the perfect healthy Easter treat! Carrot and apple make such a good combo.

    And I agree that Easter should be in April. I can never keep up with creating recipes in time for the holidays when there’s more than one per month!

    1. Megan says:

      Thank goodness we can eat muffins anytime!

  3. rachel @ athleticavocado says:

    I love the carrot theme on your recipes lately! I’m always stoked up with baby carrots so this is perfect 🙂

    1. Megan says:

      Thanks! Unfortunately, this is the last one for awhile. Tomorrow we have smoothies.

      1. Helen says:

        What can I use in place of applesauce.

        1. Megan says:

          Maple syrup or honey.

  4. Laura @ Sprint 2 the Table says:

    I used to make my apple carrot muffins alllll the time. I even made a protein version. Shockingly, I haven’t made a muffin in months. Time to rectify that. Love the flax idea!!!

    1. Megan says:

      An injury seems like the perfect time to start baking! P.S. I put flax or hemp in everything. Omega-3’s!

  5. Emily says:

    Mmm… yummy! I love all the flavors you combined here.

    1. Megan says:

      Thank you Emily!

  6. Lauren says:

    Oh love the combo of apple and carrot….yum!!!

    1. Megan says:

      Thank Lauren!

  7. Deborah @ Confessions of a mother runner says:

    Love the apple sauce in here and I love carrot muffins. Thanks for linking up!

    1. Megan says:

      Applesauce is one of my favorite ways to cut down on sugar.

  8. lindsay Cotter says:

    yay! can comment! and yay… I LOVE this combo! the addition of olive oil is lovely in baking.

    1. Megan says:

      YAY for commenting again! I have chrome & safari and chrome is always giving me problems.

  9. michele @ paleorunningmomma says:

    Love the carrot apple combo 🙂 Also I’ve never baked with olive oil and I’m intrigued!

    1. Megan says:

      You can bake with it just like coconut oil. You just need to be careful not to go above it’s smoke point.

  10. Susie @ SuzLyfe says:

    Love the flavors of these! Carrot and apple are perfection together, as long as you don’t let them get too sweet, but a muffin usually helps keep that from happening.

    1. Megan says:

      You will like these then, they’re not very sweet at all. Watching my sugar!