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Home » Recipes » Breads

Chocolate Chip Zucchini Muffins

Published: Sep 2, 2024 · Modified: Jun 24, 2025 by Megan

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These Healthier Chocolate Chip Zucchini Muffins are made with real food ingredients for a lighter treat but with all the flavor, texture, and delicious you expect in a zucchini muffin. Truly a gluten-free and dairy-free snack you can't resist! Enjoy them post workout, or for breakfast or a low-calorie snack!

A stack of three chocolate chip zucchini muffins on the table with more in the background and chocolate chips on the table and the top muffin is missing a bite.
Jump to:
  • Why You Will Love This Healthy Zucchini Muffins Recipe
  • Ingredients
  • Variations & Dietary Modifications
  • How to Make Chocolate Chip Zucchini Muffins
  • Serving Suggestions
  • Expert Tips
  • Recipe FAQs
  • More Healthy Muffin Recipes
  • Healthy Zucchini Chocolate Chip Muffins

Who's ready to enjoy a healthier chocolate chip zucchini muffin? There's nothing better than a chocolate chip zucchini muffin, unless it's made better for you!

These are made with whole food ingredients. No fake sugar additives or processed ingredients are involved -- just real food. Yes! Treats can be made with real food and these are some darn real food treats!

If you love these healthy zucchini muffins you've got to try these banana oat muffins or butternut squash muffins.

Why You Will Love This Healthy Zucchini Muffins Recipe

  • Simple, yet healthy ingredients. There's nothing out of the ordinary needed to make these best zucchini muffins -- just a handful of pantry staples and fresh zucchini.
  • Easy to make. These muffins take just minutes to make and just one bowl to dirty up so cleanup is a snap too!
  • All occasion treat. These zucchini muffins with chocolate chips work great any time of day but also to serve for a family brunch or special occasion lunch.

Ingredients

Ingredients to make healthy zucchini muffins on the table in bowls before mixing together.
  • Zucchini: Use fresh zucchini and shred it for the recipe. I shredded mine by pulsing in a food processor but you can easily do it with a handheld grater. I did not squeeze out the liquid in my zucchini beforehand. I found I did not have to.
  • Egg Whites: Using egg whites instead of whole eggs reduces the fat and cholesterol for a healthy zucchini muffin. You can use two whole eggs if you prefer. Make sure they are at room temperature before mixing together.
  • Milk: I am using unsweetened almond milk but you can swap it for another non-dairy milk or even use regular dairy milk if you prefer. It's important to use unsweetened and unflavored so you don't add more sugar or any flavorings that may interfere with the flavor.
  • Maple syrup: A less processed sugar for sweetening the muffins. You can use a zero calorie syrup if you like or honey instead.
  • Oil: Adds moisture to the muffins. You can use extra virgin olive oil or melted coconut oil depending on your preferences. Some coconut oils have a bit of flavor which may be slightly noticeable in the muffins but it works unless you don't like coconut.
  • Vanilla extract
  • Oat Flour: Make sure you oat flour or oats are gluten-free if you need them to be. While oats naturally don't contain wheat they are often processed in facilities with wheat so there may be some cross-contamination. If you can't find oat flour you can also make your own with regular old-fashioned oats.
  • Cinnamon and salt: Cinnamon adds warmth and natural sweetness simply making the muffins taste better while salt brings everything together.
  • Leavening: These zucchini muffins use a combination of baking powder and baking soda to cook up light and fluffy.
  • Mini dairy-free chocolate chips: I highly recommend the mini ones because they work much better in the muffins than the regular-sized chocolate chips. Feel free to use regular semi-sweet chocolate chips if you don't need them dairy-free.

Variations & Dietary Modifications

  • Skip the Chocolate Chips: You can easily leave the chocolate chips out for plain zucchini muffins!
  • Add Nuts: Pecans, pistachios, and walnuts all work great chopped up and added to the batter at the same time as the chocolate chips.
  • Different Flavored Chips: Try these with dairy-free white chocolate chips or even dark chocolate if you like a more intense chocolate flavor.
  • Berries: Swap the chocolate chips for small blueberries or raspberries!

How to Make Chocolate Chip Zucchini Muffins

Preheat oven to 400 F. Prepare a muffin pan with nonstick spray or line with muffin liners. 

Mixing the liquid ingredients in a mixing bowl with a wooden spoon.

Step 1: Combine the eggs, maple syrup, milk, vanilla extract and extra virgin olive oil in a mixing bowl and stir until smooth.

Shredded zucchini is added to the bowl of liquid ingredients and a wooden spoon is leaning on the side of the bowl in the batter.

Step 2: Add the shredded zucchini and stir into the mixture.

Flour is added to a bowl with visbile piles of cinnamon and other dry ingredients on top.

Step 3: Combine the flour, cinnamon, baking powder, baking soda and salt in another bowl and whisk together.

Dry ingredients are added to the bowl of wet ingredients with a wooden spoon in the bowl.

Step 4: Add the dry ingredients to the wet ingredients in small amounts.

Zucchini muffin batter in a bowl with a wooden spoon to the side.

Step 5: Stir together to incorporate the into the batter.

Chocolate chips are visible on top of the zucchini muffin batter.

Step 6: Add the chocolate chips and stir into the batter.

Chocolate chip zucchini muffin batter poured into a muffin tin and chocolate chips on top.

Step 7: Spoon the batter into the 12 muffin cavities. Be sure it's divided evenly among each cavity. 

Chocolate chip zucchini muffins after baking and still in the baking pan.

Step 8: Bake the muffins at 400 F for 17-20 minutes or until a toothpick can be inserted clean in the muffins. Cool the muffins in the pan 10 minutes before removing them and cooling on a baking rack.

Serving Suggestions

Whether on their own or added to a meal, these zucchini chocolate chip muffins are always a hit! Here are a few ideas for a bit of inspiration.

They are ideal for a quick breakfast in the morning or one on the go! Add a chocolate fudge protein smoothie, slice of berry yogurt bake, or a protein smoothie bowl for a more balanced meal.

Serve them up with your favorite egg dishes for breakfast at home or a weekend brunch. I love them with this veggie egg bake and my salsa egg muffins.

Chocolate chip zucchini muffins on a piece of parchment on the table with a bowl of chocolate chips and more scattered around the muffins on the table.

Expert Tips

  • Store: Store leftover muffins in an airtight container in the refrigerator up to 7 days or you can freeze them for up to three months if you need longer storage. Thaw them out on the counter when you're ready to serve them.
  • Cool before storing: Allow the chocolate chip zucchini muffins to cool completely before storing them to prevent moisture from building up in the container.
  • Don't mix too much. You want to just mix until the ingredients come together. Mixing the dough too much may lead to tough muffins.

Recipe FAQs

How do I make my own gluten-free oat flour?

It's quite easy to do. Place regular oats in a blender or food processor and blend until the mixture is broken down to a texture similar to flour. Make sure your oats are gluten-free so your flour is also gluten-free.

How do I know my zucchini breakfast muffins are done?

Ovens don't always cook in the same amount of time so I recommend checking them a little earlier than the time in the recipe card. The muffins are done when you insert a toothpick into the center of the innermost muffins and the toothpick comes out mostly clean. You want a few clinging pieces of muffin but not wet dough.

Can I make mini muffins?

Sure! You can easily make these into mini muffins. I suggest checking the muffins after 10 minutes as they will likely cook in less time than full-sized muffins.

Healthy zucchini muffins laid out on a piece of parchment with a bowl of zucchini noodles in the background.

More Healthy Muffin Recipes

  • Strawberry Greek Yogurt Muffins! Bursting with strawberries and creamy greek yogurt, these easy to make muffins make a delicious low calorie breakfast or snack for just 84 calories. Quick to make and gluten free too!
    Strawberry Greek Yogurt Muffins
  • These Blueberry Hemp Flaxseed Muffins make a delicious low sugar, gluten free and low calorie treat! A lighter muffin made with whole grains, flax, hemp hearts with fresh blueberries. Start your day with this muffin recipe or take them with you for a sweet treat on the go. Gluten Free + Low Calorie
    Blueberry Hemp Flaxseed Muffins {GF, Low Cal}
  • Chocolate Pumpkin Almond Flour Muffins! These muffins are Paleo, dairy-free and lightly sweetened with maple syrup. A great gluten free snack anytime of day! Paleo + Gluten Free + Low Calorie
    Chocolate Pumpkin Almond Flour Muffins
  • These Skinny Raspberry Chocolate Chip Muffins are easy to make for a healthy breakfast or snack! A gluten free and low calorie muffin recipe made from real food ingredients. With bursts of sweet raspberry and chocolate in every bite, this muffin is so delicious you won't believe it's good for you. Gluten Free + Low Calorie
    Skinny Raspberry Chocolate Chip Muffins {GF, Low Cal}

If you tried this zucchini chocolate chip muffins recipe or any other recipe on my website, please please leave a 🌟 star rating and let me know how you go in the 📝 comments below.

Chocolate chip zucchini muffins on a piece of parchment with one missing a bite, out of the paper and turned to show bite facing up.

Healthy Zucchini Chocolate Chip Muffins

Megan Olson
These healthier Chocolate Chip Zucchini Muffins are made with real food ingredients for a lighter treat but with all the flavor, texture, and delicious you expect in a zucchini muffin. Truly a gluten-free and dairy-free snack you can't resist! Enjoy them post workout, or for breakfast or a low-calorie snack!
5 from 3 votes
Print Recipe Pin Recipe
Prep Time 10 minutes mins
Cook Time 20 minutes mins
15 minutes mins
Total Time 45 minutes mins
Course Breakfast, Snack
Cuisine American
Servings 12 muffins
Calories 188 kcal

Ingredients
 
 

  • 1 cup Zucchini shredded, I shredded mine by pulsing in a food processor
  • 4 large Egg Whites room temperature
  • ⅔ cup Unsweetened Almond Milk or milk of choice
  • ⅓ cup Maple Syrup
  • ⅓ cup Extra Virgin Olive Oil
  • 1 teaspoon Vanilla Extract
  • 1 ¾ cups Oat Flour gluten free*
  • 1 teaspoon Cinnamon
  • 1 teaspoon Baking Powder
  • ½ teaspoon Baking Soda
  • ¼ teaspoon Salt
  • ¼ cup Mini Chocolate Chip

Instructions
 

  • Preheat oven to 400 F. Prepare a muffin pan with nonstick spray or line with muffin liners. 
  • In a large mixing bowl, combine the eggs, maple syrup, milk, vanilla extract and extra virgin olive oil until smooth. Add the shredded zucchini and stir into the mixture.
  • In a separate bowl, combine the flour, cinnamon, baking powder, baking soda and salt. Slowly fold the dry ingredients into the wet ingredients and stir to incorporate. Last, stir in the chocolate chips.
  • Spoon the batter into the 12 muffin cavities, dividing it evenly among each cavity. 
  • Bake at 400 F for 17-20 minutes or until a toothpick can be inserted clean in the muffins. 
  • Cool the muffins in the pan 10 minutes before removing and placing on a wire baking rack to cool completely. Store in the refrigerator up to 7 days. 

Notes

  • *I have not tested other flours with this recipe. Almond flour will likely work, but you may need a little less as it is a bit more dense than oat flour. You can use oats to make oat flour if you want to. Your flour does not need to be gluten free unless you are gluten free.
  • If you are dairy-free, ensure you are using dairy-free milk and chocolate chips. If you are not dairy-free, you can use regular ones.
  • You can swap the egg whites for 2 whole eggs. Note, the calories will be higher, dietary fat higher and protein will be lower with that swap.
  • Store leftover muffins in an airtight container in the refrigerator up to 7 days or you can freeze them for up to three months if you need longer storage. Thaw them out on the counter when you're ready to serve them.
  • Allow the chocolate chip zucchini muffins to cool completely before storing them to prevent moisture from building up in the container.
  • Don't mix too much. You want to just mix until the ingredients come together. Mixing the dough too much may lead to tough muffins.

Nutrition

Serving: 1muffinCalories: 188kcalCarbohydrates: 21gProtein: 4gFat: 10gSaturated Fat: 2gPolyunsaturated Fat: 1gMonounsaturated Fat: 6gTrans Fat: 0.004gCholesterol: 0.3mgSodium: 136mgPotassium: 193mgFiber: 2gSugar: 8gVitamin A: 24IUVitamin C: 2mgCalcium: 58mgIron: 1mg
Tried this Recipe? Let me know!Let us know how it was!

About Megan

Megan is a certified nutrition practitioner, author, freelance food photographer and fitness instructor living in Phoenix, Arizona. On her blog, Skinny Fitalicious she shares EASY, gluten free recipes for weight loss. Follow Megan on Facebook, Twitter, Pinterest and Instagram for the latest updates.

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    5 from 3 votes (2 ratings without comment)

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    Recipe Rating




  1. Michelle says

    February 02, 2019 at 1:07 pm

    I'm not sure why mine came out so oily. I used melted coconut oil in place of the olive oil.
    Did anyone else have this problem?

    Reply
    • Megan says

      February 03, 2019 at 3:25 pm

      Mine don't turn out that way when I use olive oil. Coconut oil is denser than olive oil so it makes sense that they would be oily because there would be too much moisture.

      Reply
  2. Miz Helen says

    August 19, 2015 at 1:35 pm

    Your Muffins look awesome. Hope you are having a great day and thanks so much for sharing with Full Plate Thursday.
    Come Back Soon!
    Miz Helen

    Reply
  3. GiGi Eats says

    August 13, 2015 at 11:45 am

    These muffins wanna get in my facee!

    Reply
    • Megan says

      August 13, 2015 at 11:49 am

      I will gladly put one in your face. 😉

      Reply
  4. Laura @ Sprint 2 the Table says

    August 10, 2015 at 3:01 pm

    Oy... I am so sorry you can't catch a break! Things will settle down eventually. During hard times I always like to remember that it can always get worse. Sounds depressing, but it's true. Or maybe I'm a hopeless pessimist...

    Reply
    • Megan says

      August 10, 2015 at 6:09 pm

      That to me sounds more like an optimist.

      Reply
  5. Becca @ The Earthlings Handbook says

    August 10, 2015 at 1:23 pm

    Wow, too many problems at once! I am sending you healing thoughts. Making muffins for yourself is a great idea--you deserve them, and maybe you also can use them as a bargaining tool to encourage friends to help you so you can get more rest.

    Reply
    • Megan says

      August 10, 2015 at 6:11 pm

      Thank you Becca. I really appreciate your kind words.

      Reply
  6. Nicole @ Fitful Focus says

    August 10, 2015 at 11:45 am

    I'm so sorry for everything you're going through. I find that when bad stuff happens, it tends to pile on all at once, making every individual thing feel worse than it is. The car thing sucks. The leg thing sucks. The female problems REALLY sucks. But bad things come in 3's right?! So hopefully this is it and it can only go up from here! Eat some of those delicious muffins, find yourself a show or a book that will make you laugh (have you read "Let's Pretend This Never Happened?" - I think you need that right now) and hopefully no one (and no thing) will come around to piss you off this week!

    Reply
    • Megan says

      August 10, 2015 at 6:12 pm

      I never heard of that book Nicole, but I'm going to look into it. I could use a good laugh and a muffin. 🙂

      Reply
  7. Rachel @ athleticavocado says

    August 10, 2015 at 10:07 am

    I love zucchini chocolate chip muffins! These look so tasty! Glad that they are healthier 🙂

    Reply
    • Megan says

      August 10, 2015 at 6:12 pm

      There's just something magical about zucchini in baked goods.

      Reply
  8. Jill @ Champagne for Everyday says

    August 10, 2015 at 7:15 am

    🙁 I'm sorry to hear that things haven't taken a turn for the better for you! But I feel like I just know there is going to be a day sometime in the near future where you are like, "I BEAT THIS!!" because you are totally a fighter and I have complete faith you will get there 🙂

    PS. I'm going to make your muffins tonight. XX

    Reply
    • Megan says

      August 10, 2015 at 6:14 pm

      Aw thanks Jill. You're right, I am a fighter. Thanks for the reminder. Hope you love the muffins. xoxo

      Reply
  9. Kathryn says

    August 10, 2015 at 6:56 am

    This is my first visit to your blog, I have to say while I am devastated to hear what you are going through, I appreciate you being REAL. I've had fractures in my TIBIA too and it sucks, and you get over it but there are times where you just...well, hate life. Keep on bloggin!

    Reply
    • Megan says

      August 10, 2015 at 6:15 pm

      Thanks Kathryn! I'm glad you appreciate me being real.

      Reply
  10. lauren says

    August 10, 2015 at 6:56 am

    I am so sorry you are dealing with all of this. But as someone else mentioned above, you are only given as much as you can handle, and clearly you will get through all of this in due time.
    Hope things turn around soon. Thinking all good thoughts for you:)

    Reply
    • Megan says

      August 10, 2015 at 6:15 pm

      Thank you Lauren. I really appreciate that!

      Reply
  11. Morgan @ Morgan Manages Mommyhood says

    August 10, 2015 at 6:00 am

    I'm so sorry you're going through all of this. You are so strong, though, and we all are here to cheer you on! These muffins look amazing!!!

    Reply
    • Megan says

      August 10, 2015 at 6:16 pm

      Thanks! I'm glad I have all of you guys support!

      Reply
  12. Deborah @ Confessions of a Mother Runner says

    August 10, 2015 at 4:52 am

    Stop reading about things on line! It totally freaked me out when I did it. You are very strong and you will heal quickly if you rest it. I know it's frustrating! Anyway the muffins look fab thanks for linking up!

    Reply
    • Megan says

      August 10, 2015 at 6:17 pm

      I had to look something up because my leg has this rash and the skin turned leather, that's when I stumbled on the scary stuff. Otherwise I've been trying to avoid it.

      Reply
  13. SuzLyfe (@suzlyfe) says

    August 10, 2015 at 4:24 am

    Love you. I wish I could just give you the biggest hug ever right now. There are so many things that I could say, but you know what? you've heard them all before and I'm pretty sure you don't want to hear them now. When life gives me lemons, I find a way, anyway that I possibly can, to find a piece of humor in the madness. Get the smile started. It will help you approach the world a little bit more positively. Thinking about you.

    Reply
    • Megan says

      August 10, 2015 at 6:18 pm

      I haven't known you long Suz, but I so really appreciate our connection and your positivity. Love you too. 🙂

      Reply
  14. Ashlee says

    August 10, 2015 at 3:00 am

    Hi I know you don't know me but I'm so sorry that all this is happening to you. I had a similar situation happen to me last year and I couldn't understand why me? I think the answer is because you're strong and you can handle anything thrown your way. I had a broken foot and I literally cried daily because I couldn't do what I wanted to do. Then last year I woke up to severe bleeding too and it turned out that I was one in a million where my urethra decided to come out and at 27 with zero risk factors I was so angry at the world. This year a few various things have occurred that I won't get I to lol but at this point I sort of just laugh it off which isn't easy, but I'm happy to be me and not understand why life throws these curveballs. Hang in there god doesn't throw anything at you that you can't handle. You're such a beautiful woman and you will fight throw all this and win.

    Reply
    • Megan says

      August 10, 2015 at 6:21 pm

      I'm so sorry to hear you've been through all that, but I am sort of glad you did so you could tell me today how you came out the other side of it. Sometimes you just need to hear that it's not just you going through a lot of crap or in your case, have gone through. I just hope this is all over with soon. It's been a long two years. Thanks for giving me hope Ashlee.

      Reply
  15. Michele @ paleorunningmomma says

    August 10, 2015 at 2:08 am

    You are right - real life is messy as hell! You'll get through all of this, I know you realize that, and I'm here to read your words and empathize or listen whenever you need. Sending lots of hugs to you!

    Reply
    • Megan says

      August 10, 2015 at 6:18 pm

      Thank you Michele, please just keep reminding me that I will get through this.

      Reply
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Megan is a nutritionist, author of the Low Calorie Cookbook and podcast host of the Dish On Ditching Diets. Megan helps women over 35 stop dieting, heal their relationship with food and lose weight sustainably. Megan lost 80 pounds herself. Here you get healthy, lower calorie recipes!

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