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Home » Recipes » Desserts

Pumpkin Apple Crisp

Published: Nov 18, 2024 by Megan

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This Pumpkin Apple Crisp is sweet, has a hint of spice and lots of textures. It’s the perfect healthier dessert to make this fall and holiday season, especially if you’ve got picky eaters. You can enjoy it as-is or team it up with some ice cream or Greek yogurt. What’s more, it’s low-calorie and gluten-free too! 

Pumpkin apple crisp served up on a plate with another plate to the side, a whole apple, and napkin.
Jump to:
  • Why You’ll Love This Pumpkin Apple Crisp Recipe
  • Ingredients
  • Variations
  • How to Make Pumpkin Apple Crisp
  • Storage Directions 
  • Serving Suggestions
  • Expert Tips
  • Recipe FAQs
  • More Delicious Healthy Crisp and Cobbler Recipes
  • Pumpkin Apple Crisp

Holidays have always been my favorite time of the year, where I try lots of fun and healthy recipes for me and my family to enjoy. My chocolate chip pumpkin protein bars, healthy apple cinnamon crumb bars, and chocolate chip zucchini muffins have all been huge hits, and this time, I wanted to experiment with something more simple and effortless. 

And this pumpkin apple dessert hit all the right spots. It’s made with wholesome ingredients and is the perfect sweet treat to enjoy without restricting yourself too much. 

Why You’ll Love This Pumpkin Apple Crisp Recipe

  • Healthier: It’s made using simple whole food ingredients and a natural sweetener, which makes it so much healthier.
  • Perfect for holidays: It packs in those perfect fall flavors and uses fall fruits too. It’s great to make during the holidays!
  • Easy to make: You’ll need just about 15-20 minutes of kitchen time to put this together. It’s really easy.
  • Versatile and delicious: This has to be one of my favorite apple pumpkin recipes. You can enjoy and serve it in so many ways, or even just on its own.

Ingredients

Ingredients to make pumpkin apple crisp on the table before making the dish.
  • Apples: Gala apples work great for this recipe and are the star ingredient of the filling. 
  • Pumpkin puree: For that delicious pumpkin flavor. Make sure you’re using pumpkin puree and not pumpkin pie filling. 
  • Honey: To sweeten the apple pumpkin crisp. Choose other less processed sweeteners like coconut sugar or maple syrup if you don’t have honey. You can also use monk fruit or another sugar free sugar of your liking.
  • Tapioca flour: You’ll need just a bit, to thicken the filling and get it to that saucy texture. If you don’t have this, you can use cornstarch or arrowroot powder instead. 
  • Pumpkin spice: To lend the filling that hint of that beautiful fall flavor and aroma. 
  • Almond flour: This replaces the flour typically used in a crisp, giving it a bit of healthy fat and keeping it gluten-free, while creating that beautiful crumbly texture and flavor. You can replace the almond flour with gluten free flour or whole wheat flour. You may need to add just a touch more olive oil to make up for the reduction in fat.
  • Gluten-free rolled oats: I used gluten-free rolled oats for the topping here. They’re a great source of soluble fiber and crisp up beautifully too! 
  • Cinnamon: Just a dash, for a more intense warm, cozy fall flavor.
  • Extra virgin olive oil: To crisp up the topping. It’s the perfect healthier swap for butter. 
  • Pecans: These are optional, but I would highly recommend them. They are super healthy and add a nice bit of crunch too. 

See the recipe card below for exact ingredient amounts, nutritional information, and detailed instructions.

Variations

  • Fruity fun: You can also use a mix of apples and pears to lend this apple and pumpkin dessert a slightly different flavor. Just remember to choose firm pears that hold their shape well when they are baked. 
  • Add dried fruit: Add some dried cranberries to the filling for an extra pop of flavor and color. Just be sure to use unsweetened!
  • Nut-free: Leave out the pecans or swap them for sunflower seeds or pumpkin seeds.

How to Make Pumpkin Apple Crisp

To make this pumpkin apple crisp, start by preheating your oven to 350 F and spray the inside of a 2 ½ quart baking dish with cooking spray. 

Ingredients to make the crisp topping in a bowl.

Step 1: Prep the topping. In a mixing bowl, combine all the ingredients for the topping.

Crisp topping mixed together in a bowl.

Step 2: Get it ready. Mix only until you get a uniform topping mixture. Set this aside. 

Apples, pumpkin puree, and spices in a bowl.

Step 3: Prep the filling. In another bowl, add all the ingredients for the filling.

Apple and pumpkin mixture for the crisp mixed together in a bowl.

Step 4: Time to mix. Mix them until all the apples are nicely coated.

Apple mixture placed in an oval baking dish.

Step 5: First layer. In the prepared baking dish, layer the filling.

Crisp topping added on top of the pumpkin and apple crisp filling.

Step 6: Second layer. Top this with the topping mixture and use a spatula to smoothen it out.

Pecans added on top of the apple pumpkin crisp.

Step 7: Top with pecans. Top the oats topping mixture with pecans. Press them down into the topping just a little bit. 

Baked pumpkin apple crisp lightly browned on the counter.

Step 8: Bake, cool and serve. Pop the dish in the oven and bake for 40-45 minutes or until the topping is nice and golden brown. Remove, allow it to cool down for a few minutes and then serve.

Storage Directions 

  • Storing: If you have some leftovers, you can store them for 3-4 days in the refrigerator. If you have a large portion, cover the baking dish with kitchen foil before you refrigerate. Smaller portions can be transferred to an airtight container and refrigerated. You can also freeze the crisp if you want to. Use a freezer-safe container for storage, and it should last for up to 3 months. 
  • Reheating: You can reheat the apple pumpkin crisp in the microwave or the oven. If you’re reheating a frozen crisp though, you’ll need to make sure you thaw it overnight before you pop it in the oven. 
A pumpkin apple crisp in an oval baking dish with a wooden spoon leaning on the dish and a portion missing.

Serving Suggestions

Serve this apple pumpkin dessert at a dinner or a get-together you’re hosting, and it is sure to be a total crowd pleaser. While it tastes incredible on its own, you can top it up with a scoop of vanilla ice cream or a dollop of Greek yogurt or whipped cream for the ultimate finish.

It’s almost always on our holiday dinner table after a hearty meal of a turkey dish, like my favorite Instant Pot turkey breast, and sides like healthy stuffing and sugar free cranberry sauce. 

Expert Tips

  • Just a pinch: To enhance the flavors of the filling, you can add a pinch of salt into the mix.
  • Slice them right: Make sure you slice and cube the apples into even sized pieces. This will ensure that they’re all evenly cooked.
  • Cover it up: If your topping is browning too quickly, you can cover the baking dish with aluminum foil and continue cooking.

Recipe FAQs

I don’t have Gala apples. What other kinds of apples can I use?

Honeycrisp, Macintosh and Cortland are some good choices to opt for if you don’t have Gala apples at hand. But of course, using almost any other kind of baking apples works fine too. Try to avoid apples that breakdown easily or are overly sweet.

Is it necessary to peel the apples?

Absolutely not! If you love apples with their skin on, you can totally do that too! I just prefer it this way.

A bowl of apple pumpkin crisp in a bowl with a fork to the side and another serving in the back and some oats.

More Delicious Healthy Crisp and Cobbler Recipes

  • peach crisp on a white plate
    Low Calorie Peach Cobbler {GF, Paleo, Vegan}
  • Gluten Free Apple Crisp made with almond flour, cinnamon and lower in sugar. An easy apple crisp that's better balanced in nutrition and dairy free. A healthy dessert recipe that everyone goes crazy for! Gluten Free + Low Calorie + Paleo
    Gluten Free Apple Crisp {GF, Low Cal, Paleo}
  • Low Sugar Berry Cobbler is the ultimate summertime treat! Made in one skillet with glycemic friendly ingredients. Low in calories and higher in protein than traditional cobblers, this warm weather dessert is sure to be your new favorite treat. Paleo + Gluten Free Options
    Low Sugar Berry Cobbler {GF, Low Cal, Vegan}
  • Paleo Berry Cobbler! An irresistible dessert with a delicious almond flour topping! Dairy free, Vegan friendly, easy to make and customize too!
    Paleo Berry Cobbler {GF, Paleo, Low Cal, Vegan}

If you tried this Pumpkin Apple Crisp Recipe or any other recipe on my website, please please leave a 🌟 star rating and let me know how you go in the 📝 comments below.

Pumpkin apple crisp topped with pecans in a baking dish with a wooden spoon lifting a serving out.

Pumpkin Apple Crisp

Megan Olson
Pumpkins and apples are a match made in heaven, and this easy pumpkin apple crisp recipe celebrates them both. It’s saucy, sweet and has a delicious crispy topping that you’ll fall in love with.
5 from 1 vote
Print Recipe Pin Recipe
Prep Time 20 minutes mins
Cook Time 45 minutes mins
Total Time 1 hour hr 5 minutes mins
Course Dessert
Cuisine American
Servings 8 servings
Calories 266 kcal

Ingredients
 
 

For the Filling:

  • 4 Apples peeled, cored and cubed (I used Gala)
  • ½ cup Pumpkin Puree not pumpkin pie filling
  • 3 tablespoons Honey
  • 2 tablespoons Tapioca Flour
  • 2 teaspoons Pumpkin Spice

For the Topping:

  • 1 ½ cups Gluten Free Rolled Oats
  • ½ cup Almond Flour
  • ½ teaspoon Cinnamon
  • ¼ cup Extra Virgin Olive Oil
  • 3 tablespoons Honey
  • Optional: raw pecans to top

Instructions
 

  • Preheat oven to 350 F. Spray the inside of 2 1/2 quart baking dish with cooking spray.
  • In a large mixing bowl, add cubed apples, honey, pumpkin puree, tapioca flour and pumpkin spice. Stir the ingredients then transfer to the prepared baking dish, spreading the mixture into an even layer on the bottom of the pan.
  • In a separate bowl, combine the ingredients for the topping. Stir together then place over the apple mixture in the baking dish. Place optional raw pecans on top, pressing them into the oats a bit.
  • Bake at 40-45 minutes until the top is golden brown and the filling is bubbling.
  • Serve immediately with Greek yogurt or non-dairy ice cream. Store leftovers in the refrigerator up to 7 days.

Notes

  • 1 serving is approximately 1 cup but this will depend on your size apples.
  • Make sure you slice and cube the apples into even sized pieces. This will ensure that they’re all evenly cooked.
  • To enhance the flavors of the filling, you can add a pinch of salt into the mix.
  • If your topping is browning too quickly, you can cover the baking dish with aluminum foil and continue cooking.
  • Make sure you use pumpkin puree from a can, not pumpkin pie filling.

Nutrition

Serving: 1servingCalories: 266kcalCarbohydrates: 41gProtein: 4gFat: 11gSaturated Fat: 1gPolyunsaturated Fat: 1gMonounsaturated Fat: 5gSodium: 4mgPotassium: 196mgFiber: 5gSugar: 23gVitamin A: 2434IUVitamin C: 5mgCalcium: 38mgIron: 1mg
Tried this Recipe? Let me know!Let us know how it was!

About Megan

Megan is a certified nutrition practitioner, author, freelance food photographer and fitness instructor living in Phoenix, Arizona. On her blog, Skinny Fitalicious she shares EASY, gluten free recipes for weight loss. Follow Megan on Facebook, Twitter, Pinterest and Instagram for the latest updates.

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  1. Amy says

    November 23, 2022 at 5:42 pm

    Thanksgiving is busy in the oven. Can this be prepped and baked the day of? Or would it be better to bake it the day before and just store in the fridge? Which would be better?

    Reply
    • Megan says

      November 25, 2022 at 9:30 am

      It can be prepped and baked the day of or it can be prepped and baked ahead of time. If you do it ahead of time, then you would still need to reheat in the oven.

      Reply
  2. anna says

    November 19, 2017 at 2:42 pm

    Love crisp and now I need to make with pumpkin spice! Thanks for the idea!

    Reply
    • Megan says

      November 20, 2017 at 8:32 am

      Glad you liked it!

      Reply
  3. Laura @ Sprint 2 the Table says

    November 14, 2017 at 8:42 am

    I love the pumpkin in the filling! Brilliant. Normally I just eat the top off of crisps, but that filling would have to be devoured.

    Reply
    • Megan says

      November 14, 2017 at 1:11 pm

      I don't blame you, 'cuz I sure did!

      Reply
  4. Kelli @ Hungry Hobby says

    November 13, 2017 at 8:39 pm

    VERY good point! And this looks delicious!

    Reply
    • Megan says

      November 14, 2017 at 5:36 am

      Thanks friend! xoxo

      Reply
  5. Emily @ Pizza & Pull-Ups says

    November 13, 2017 at 2:39 pm

    This sounds SO good! Will definitely be trying soon.

    Reply
    • Megan says

      November 14, 2017 at 5:34 am

      Hope you do!

      Reply
  6. Nicole @ Bento Momentos says

    November 13, 2017 at 11:14 am

    It's like the 2 essential flavors of fall got together and made something even more delicious. Thank you!

    Reply
    • Megan says

      November 13, 2017 at 12:53 pm

      I love blending favorite flavors. Thank you Nicole!

      Reply
  7. Susie @ Suzlyfe says

    November 13, 2017 at 6:39 am

    I won't be making Thanksgiving dinner, but when we get back... THIS IS SO ON

    Reply
    • Megan says

      November 13, 2017 at 12:52 pm

      You NEED!

      Reply

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Megan is a nutritionist, author of the Low Calorie Cookbook and podcast host of the Dish On Ditching Diets. Megan helps women over 35 stop dieting, heal their relationship with food and lose weight sustainably. Megan lost 80 pounds herself. Here you get healthy, lower calorie recipes!

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