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Home » Blog » Diets » Gluten Free » Healthy Chocolate Thumbprint Cookies {GF, Low Calorie}

Healthy Chocolate Thumbprint Cookies {GF, Low Calorie}

Published: Dec 14, 2020 · Modified: Nov 4, 2022 by Megan

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Healthy Chocolate Thumbprint Cookies made low calorie and gluten free are a delicious holiday cookie recipe with peppermint sprinkles on top! Gluten Free + Low Calorie

Healthy Chocolate Thumbprint Cookies made low calorie and gluten free are a delicious holiday cookie recipe with peppermint sprinkles on top! Gluten Free + Low Calorie

Chocolate goes well with anything and these cookies serve up a double batch for you! Image a brownie like cookie with a creamy chocolate filling ... that's what these Chocolate Thumbprint Cookies taste like!

They're a healthy holiday cookie recipe that's gluten free, lower in sugar and just 115 calories each!

Healthy Chocolate Thumbprint Cookies made low calorie and gluten free are a delicious holiday cookie recipe with peppermint sprinkles on top! Gluten Free + Low Calorie

What Makes These Thumbprint Cookies Healthy?

I LOVE making holiday cookies and I 100% believe that cookies are part of a healthy diet even when you're trying to lose weight. In fact, I ate a cookie a day losing 80 pounds and I promote that with my weight loss clients too.

It is very common for women who have done one-sized fits all diets to restrict cookies because diets have taught them the mindset that cookies are bad. Diets are really good at teaching you how to restrict foods but if permanent weight loss is your goal, you must practice eating normal foods like cookies otherwise the weight comes back.

Healthy Chocolate Thumbprint Cookies made low calorie and gluten free are a delicious holiday cookie recipe with peppermint sprinkles on top! Gluten Free + Low Calorie

Adjusting your mind around this concept AND finding healthier cookie recipes like this one will help you keep the weight off for good! Here's a few reasons why this thumbprint cookie recipe is better for you.

  • Low Calories - Each cookie is 115 calories and there are 12 cookies total. Technically I got 15 cookies when I made these, so you could make these a little lower in calories by making a few more cookies too!
  • Low Sugar - Most recipes have way too much sugar in them. As a rule of thumb, I use half the amount of sugar recipes call for. They are just as delicious, but less addicting. This recipe uses coconut sugar, which is a little kinder to your insulin levels than other sugars.
  • Gluten Free - Gluten is inflammatory for many people. This recipe uses gluten free ingredients.
  • Lower Fat - Healthy fats are used in this recipe and only 3 of the 7 grams are coming from saturated fats (bad fat).
  • Lower Carb - Carbs are 13 grams, 2 of which come from fiber (YES!). The ingredients are well balanced to keep the carbs lower.
Healthy Chocolate Thumbprint Cookies made low calorie and gluten free are a delicious holiday cookie recipe with peppermint sprinkles on top! Gluten Free + Low Calorie

Ingredients For Gluten Free Chocolate Thumbprint Cookies

These chocolate thumbprint cookies are made gluten free. I am gluten free for my autoimmune disease and never bake with whole or white flours. Here are the ingredients you'll need to make your chocolate thumbprint cookies. If you need substitutions, those are further down in the post for you.

  • Gluten Free Baking Flour
  • Almond Flour
  • Grass Fed Butter, unsalted
  • Egg
  • Almond Milk, unsweetened
  • Ground Coffee
  • Vanilla Extract
  • Peppermint Extract
  • Ground Coffee
  • Baking Soda
  • Salt
  • Chocolate chips
  • Tahini

You will also need a large baking sheet, mixing bowl, parchment paper and if desired, candy canes for the top!

Healthy Chocolate Thumbprint Cookies made low calorie and gluten free are a delicious holiday cookie recipe with peppermint sprinkles on top! Gluten Free + Low Calorie

How To Make Low Calorie Thumbprint Cookies

It is easy to make healthier thumbprint cookies with chocolate! In a bowl, cream together the butter, sugar, vanilla and peppermint with a whisk. Add the almond flour, cacao powder, baking soda, salt and coffee and mix together. Mix in the flour a little at a time with a spoon until combined. Whisk in the egg and almond milk until a sticky dough forms.

You do not need to chill the dough before baking, but you can chill it for 15-20 minutes to prevent from cracking. Scoop the dough out into 15 small balls on a parchment covered sheet pan. Use your thumb to press a hole into the ball.

Bake the cookies for at 375 F 7-9 minutes, or until they are firm. Remove them from the oven and set them aside to cool.

While the cookies cool, make the chocolate center, melt the chocolate chips in 15 second increments in a small microwave safe bowl until they are melted and can be mixed together. Stir in the tahini paste and the extract.

Spoon the chocolate into the center of the cookie until it is full then crush peppermint stick and sprinkle over the top if you desire.

Healthy Chocolate Thumbprint Cookies made low calorie and gluten free are a delicious holiday cookie recipe with peppermint sprinkles on top! Gluten Free + Low Calorie

How To Store Thumbprint Cookies

Store your cookies in an airtight container up to 2 weeks at room temperature or in the refrigerator. If you don't eat them all before then!

You can alternatively freeze your cookies up to 3 months in a container or plastic bag.

Healthy Chocolate Thumbprint Cookies made low calorie and gluten free are a delicious holiday cookie recipe with peppermint sprinkles on top! Gluten Free + Low Calorie

Substitutions For Chocolate Thumbprint Cookies

Here are the substitutions you could make for these cookies and my thoughts on the questions I know I will receive. Please remember that substituting ingredients will result in changes to the nutritional values.

  • Flour - This is a gluten free thumbprint recipe. No other flours have been tested with the recipe. If you want to only use almond flour, I imagine it will work but you will need to test the ratios as almond flour is a bit more dense. For a coconut flour thumbprint cookie, use this recipe and add the chocolate filling to the center.
  • Egg - I have not tested this recipe NOT using the egg. But if you need something egg free, I recommend trying an egg replacer like this one, but I'm not convinced it would work here.
  • Butter - Ghee or melted coconut oil can be substituted. If you use coconut oil, it may result in cookies that taste slightly like coconut.
  • Milk - Any milk will work in this recipe.
  • Dairy Free - Use ghee or coconut oil in place of the butter and use dairy free chocolate chips.
  • Cocoa Powder - You can swap for cacao
  • Tahini - Peanut butter, almond butter or cashew butter can replace this.
  • Ground Coffee - Espresso powder can be subbed. You could omit this, but it really gives the cookies an amazing flavor.
  • Peppermint Extract - This is optional and you can replace it with vanilla extract or orange extract.
  • Coconut Sugar - I have not tested these with a sugar free sweetener, but I imagine you could swap with monkfruit or brown sugar.
Healthy Chocolate Thumbprint Cookies made low calorie and gluten free are a delicious holiday cookie recipe with peppermint sprinkles on top! Gluten Free + Low Calorie

More Healthy Cookie Recipes

  • Raspberry Coconut Thumbprint Cookies
  • Healthy Sugar Cookies
  • Gingerbread Cookies
Healthy Chocolate Thumbprint Cookies made low calorie and gluten free are a delicious holiday cookie recipe with peppermint sprinkles on top! Gluten Free + Low Calorie

Healthy Chocolate Thumbprint Cookies

Megan Olson
Healthy Chocolate Thumbprint Cookies made low calorie and gluten free are a delicious holiday cookie recipe with peppermint sprinkles on top!
5 from 1 vote
Print Recipe Pin Recipe
Prep Time 30 minutes mins
Cook Time 9 minutes mins
Total Time 39 minutes mins
Course Dessert, Snack
Cuisine American
Servings 12 cookies
Calories 115 kcal

Ingredients
 
 

For the Cookie

  • 3 tablespoons grass fed butter unsalted
  • 1 teaspoon grass fed butter unsalted
  • 5 tablespoons coconut sugar
  • 1/2 teaspoon vanilla extract
  • 1/8 teaspoon peppermint extract
  • 1/2 cup Gluten Free Baking Flour
  • 1/2 tablespoon Gluten Free Baking Flour
  • 5 tablespoons almond flour
  • 3 1/2 tablespoons unsweetened cocoa powder
  • 1/4 teaspoon baking soda
  • 1/4 teaspoon salt
  • 1/4 teaspoon ground coffee
  • 1 egg room temperature
  • 2 teaspoon unsweetened almond milk

For the Chocolate Center

  • 50 grams dairy free chocolate chips
  • 2 teaspoon tahini
  • 1/4 teaspoon vanilla extract or peppermint extract
  • Crushed candy canes as desired for the top

Instructions
 

  • Preheat your oven to 375 F. Cream together the butter, sugar, vanilla and peppermint with a whisk. Add the almond flour, cacao powder, baking soda, salt and coffee and mix together.
  • Mix in the flour a little at a time with a spoon until combined. Whisk in the egg and almond milk until a sticky dough forms.
  • Scoop the dough out into 15 small balls on a parchment covered sheet pan. Use your finger or thumb to press a hole into the ball. They don’t need to be perfectly round, but make sure the indent is fairly deep.
  • Bake the cookies for 7-9 minutes, or until they are firm. Remove them from the oven and set them aside to cool.
  • Next make the chocolate center, melt the chocolate chips in 15 second increments in a small microwave safe bowl until they are melted and can be mixed together. Stir in the tahini paste and the extract.
  • Once the cookies are cool, carefully spoon a small amount of the chocolate mixture into the center of the cookie. If you’d like, sprinkle some of the crushed candy canes on top. Let the chocolate center set before enjoying.

Notes

  • My Amazon shop has more products similar to those used for this recipe and that I recommend to my weight loss clients.
  • If you enjoy this recipe, check out my cookbook for more low calorie recipes!

Nutrition

Serving: 1cookieCalories: 115kcalCarbohydrates: 13gProtein: 2gFat: 7gSaturated Fat: 3gCholesterol: 22mgSodium: 120mgPotassium: 33mgFiber: 2gSugar: 6gVitamin A: 118IUCalcium: 22mgIron: 1mg
Tried this Recipe? Let me know!Let us know how it was!

What I Used For The Recipe

Healthy Chocolate Thumbprint Cookies made low calorie and gluten free are a delicious holiday cookie recipe with peppermint sprinkles on top!
Healthy Chocolate Thumbprint Cookies made low calorie and gluten free are a delicious holiday cookie recipe with peppermint sprinkles on top!

About Megan

Megan is a certified nutrition practitioner, author, freelance food photographer and fitness instructor living in Phoenix, Arizona. On her blog, Skinny Fitalicious she shares EASY, gluten free recipes for weight loss. Follow Megan on Facebook, Twitter, Pinterest and Instagram for the latest updates.

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