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Warm gingerbread is a classic flavor and smell for the holiday season. Capture all of the flavor, but add protein and lose some of the calories with these Healthy Gingerbread Muffins.

Three healthy gingerbread muffins stacked up on one another.
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You don’t have to sacrifice your favorite flavors during the holidays. Just give them a little reworking to make them more nutritious. These gluten-free gingerbread muffins use almond flour, eggs, and a dairy-free collagen glaze to increase the protein and fiber content while decreasing the sugar and calories. The result is rich, flavorful muffins that taste like the holidays, but will leave you feeling satisfied without a sugar crash.

If you like healthy gingerbread recipes, you will love my salted gingerbread cookies and gingerbread protein brownies!

Why You’ll Love This Recipe

  • Classic Flavor: These delicious muffins are packed with the classic gingerbread flavor we all love from the molasses, ginger, and other warm winter spices.
  • Full of Fiber and Protein: Not only are these healthy muffins totally gluten-free, but they have plenty of fiber and over 5 grams of protein.
  • Bake In Less Than 15 Minutes: These delicious winter muffins are ready in less than 15 minutes! They are perfect for when you’re meal prepping or making a snack in a hurry.

Ingredients

Ingredients to make healthy gingerbread muffins in bowls.
  • Almond Flour: This gluten-free flour has both fiber and protein, which makes it a healthier and more satisfying choice to help fuel your day.
  • Coconut Flour: This flour is also high in fiber, and it’s low-carb, so it’s great for Paleo diets. It absorbs a lot of moisture, so it’s best to blend it with another flour for baking.
  • Olive Oil: Moisten the batter for your gingerbread muffins with olive oil. You could also use avocado oil or coconut oil, though the coconut oil may add too much coconut flavor.
  • Molasses: This thick, dark syrup is made from boiling sugarcane but this concentrated form is actually rich with iron, calcium, and potassium. It gives gingerbread its signature flavor.
  • Eggs: Not only do eggs act as a binder in baking, but they also add protein to your batter.
  • Spices: Since gingerbread is known for being spicy and flavorful, you’ll need vanilla extract, ginger, cinnamon, nutmeg, and cloves to make this recipe.
  • Collagen Glaze: Collagen helps support your bone density, skin firmness, and hair and nail health, especially as you age. This glaze is a simple mixture of collagen powder and unsweetened almond milk that you drizzle over your muffins.

See the recipe card below for exact ingredient amounts, nutritional information, and detailed instructions.

Variations & Dietary Modifications

  • Add Chocolate: Everything tastes better with chocolate! Try these muffins with chocolate chips mixed into the batter. They will turn out similarly to my chocolate gingerbread loaf
  • Mix In Nutes: Give your muffins a little crunch by mixing walnuts or pecans into the batter.
  • Try a Zero Calorie Sweetener: While I don’t recommend skipping the molasses, you can replace the honey with stevia or a different zero-calorie sweetener.

How to Make Healthy Gingerbread Muffins

If you love baking around the holidays, these healthy muffins are the perfect snack to make! You can enjoy them with breakfast, as a snack, or as a sweet treat after dinner. You just need a muffin tin sprayed with nonstick cooking spray and an oven preheated to 350°F.

Wet ingredients mixed in a glass bowl.

Step 1: Combine the Wet Ingredients. Combine the eggs, honey, molasses, and vanilla in a large bowl. Mix them using a hand mixer or a stand mixer.

Dry ingredients mixed in a bowl.

Step 2: Mix the Dry Ingredients. Whisk together the spices, flours, and baking soda in a separate bowl.

Gingerbread muffin batter mixed in a bowl.

Step 3: Combine All of the Ingredients. Add half of the mixed dry ingredients to the wet mixture and stir to combine. Then add the oil and the remaining flour mixture and stir until combined. The muffin batter will be thick.

Gingerbread muffin batter added to a muffin pan.

Step 4: Fill the Muffin Tin and Bake. Pour the mixture evenly into each muffin cavity and bake the muffins for 15 minutes at 350°F or until a toothpick can be inserted and removed clean. 

Drizzling the glaze over cooled muffins.

Step 5: Drizzle with Glaze. Allow the muffins to cool, then prepare the collagen glaze by stirring the collagen powder into the almond milk. Drizzle the glaze over the top of each muffin.

Recipe Tips

  • Use Room Temperature Eggs: It’s best to bake with room temperature eggs to ensure they mix evenly into the batter and don’t clump.
  • Measure Properly: When measuring out gluten-free flours, it’s important to measure them properly. I recommend using a spoon to fill your measuring cup with flour and then leveling it off, versus scooping flour straight from the bag and packing it in. See my tutorial for measuring flours properly for baking for more tips for gluten-free baking!
  • Whisk the Dry Ingredients: Use a whisk to mix the dry ingredients and ensure the spices are well incorporated into the flour. This helps you avoid pockets of spices in your muffins. 
  • Storing: Keep the gingerbread muffins in an airtight container in the refrigerator for up to 5 days. You can also wrap each muffin in plastic cling wrap and store them in a freezer-safe container for a month.
A stack of three gingerbread muffins with some white icing on the one on top.

Serving Suggestions

Fluffy gluten-free gingerbread muffins are one of my favorite holiday breakfasts. They taste amazing with a cup of coffee for breakfast or with some hot cocoa in the afternoon. Everyone will love having these muffins as part of their holiday celebrations!

Healthy Gingerbread Muffins Recipe FAQs

What can I use in place of the coconut flour to make gluten-free gingerbread muffins?

If you can’t eat coconut, you could try substituting arrowroot powder, tapioca flour, or ground flax instead to create a similar texture.

Can I make vegan gingerbread muffins by using flax eggs?

I haven’t tested this recipe using flax eggs, but I think the muffins would turn out gummy from 3 flax eggs. If you try an egg substitute, let me know how it turns out!

Can I use a different gluten-free flour to make healthy gingerbread muffins?

You could use a 1:1 gluten-free flour in place of the almond flour. You’ll still need the coconut flour to achieve the correct texture in the muffins.

Healthy gingerbread muffins on a metal cooling rack.

More Delicious Healthy Muffin Recipes

If you tried this Healthy Gingerbread Muffins recipe or any other recipe on my website, please leave a 🌟 star rating and let me know how you go in the 📝 comments below.

Almond Flour Gingerbread Muffins with collagen frosting. Spiced with warm flavors and high in protein & healthy fats! An easy breakfast or portable snack! Paleo + Gluten Free + Low Calorie  
5 from 7 votes
Servings: 12 muffins

Healthy Gingerbread Muffins

These healthy gingerbread muffins are a great, low-hassle snack for the holiday season. They are full of gingerbread flavor, but are gluten-free, dairy-free, and even have a collagen glaze.
Prep: 10 minutes
Cook: 15 minutes
Resting Time: 5 minutes
Total: 30 minutes
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Ingredients 

For the Glaze

Instructions 

  • Preheat oven to 350 and lightly spray a muffin tin with nonstick cooking spray.
  • Using a standing mixer or hand mixer, blend together the eggs, oil, honey, molasses, and vanilla until smooth. 
  • In a separate bowl, stir together the spices, flours, and baking soda. 
  • Add half the flour mixture to the liquid mixture and stir to combine. Then stir in the oil and remaining flour.
  • Divide the mixture evenly among 12 muffin cavities. Bake 15 minutes at 350 F or until a toothpick can be inserted in the center clean.
  • Cool the muffins on a wire baking rack. While the muffins cool, prepare the optional frosting by stirring the ingredients together. Drizzle the muffins with the frosting. 

Notes

  • Be sure to use room temperature eggs to avoid any clumps and ensure a smooth batter and fluffy muffins. 
  • Use a spoon to scoop out the flour and level it off instead of scooping it from the bag to ensure proper measurements. See my tutorial for measuring flours properly for baking for more tips for gluten-free baking!
  • Whisk the dry ingredients together to avoid clumps of spices in your batter and muffins. 
  • Store in the refrigerator in an airtight container up to 7 days or in the freezer 30 days. 

Nutrition

Serving: 1muffin, Calories: 205kcal, Carbohydrates: 11g, Protein: 6g, Fat: 17g, Saturated Fat: 2g, Polyunsaturated Fat: 1g, Monounsaturated Fat: 5g, Trans Fat: 0.004g, Cholesterol: 41mg, Sodium: 116mg, Potassium: 73mg, Fiber: 3g, Sugar: 6g, Vitamin A: 60IU, Vitamin C: 0.03mg, Calcium: 58mg, Iron: 1mg

Nutrition information is automatically calculated, so should only be used as an approximation.

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Megan

Megan is a nutritionist who coaches women 35+ lose weight sustainably. She is the author of the Low Calorie Cookbook, fitness instructor, host of the Dish On Ditching Diets Podcast and creator of Skinny Fitalicious where you get lighter, higher protein recipes. Follow Megan on Facebook, Pinterest, YouTube and Instagram for the latest updates.

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5 from 7 votes (3 ratings without comment)

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16 Comments

  1. Katie says:

    Where does the extra virgin olive oil go?

    1. Megan says:

      It should be in step 2 with the other wet ingredients. Hope that helps!

  2. Sara says:

    Hi Megan….when making these muffins, I made a few changes to serve my needs better….I decreased the amount of ginger to 2 teaspoons and use 4 tablespoons of honey instead of the blackstrap molasses. Molasses has high fructose corn sugar in it, I prefer more organic ingredients and I add about 1/4 cup raisins and a 1/4 cup of chopped walnuts. Makes a very yummy muffin. I cut one in 1/2 and use about a 1/2 teaspoon of peanut butter on each half. Oh my goodness, is that delicious or what. All my favorite things rolled up in one very tasty muffin. Thank you for a great recipe. I make them all the time.

  3. Margaret says:

    Hi Megan

    Could I use anything in place of coconut flour? My son can’t eat anything coconut.

    1. Megan says:

      I would try to replace it with arrowroot powder, tapioca flour or ground flax.

  4. Michelle says:

    Awesome recipe! Delicious. Thank you.

  5. LIsa B 99801 says:

    Delicious. Fast. GF/LOW CARB! WIN*WIN*WIN

  6. Matt says:

    These were wonderful! Would definitely make again. I thought they had the right amount of ginger flavor & they were not too sweet.

  7. Brenda says:

    Hi I was wondering how can I properly store these in the freezer ?

    1. Megan says:

      You can store them in a plastic bag in the freezer.

  8. Rachel @ Bakerita says:

    I’m sitting here so hungry and I wish one of these was in front of me right now!! So scrumptious!

    1. Megan says:

      Hehe I know what you mean!

  9. lindsay Cotter says:

    I can’t wait for you to share the meal plans. That’s so exciting!!

    1. Megan says:

      I am too!!! Thanks friend!

  10. Emily @ Pizza & Pull-Ups says:

    What a great idea to use collagen to make your frosting. Thanks for sharing. Sounds like you guys had a lovely weekend!

    1. Megan says:

      Yes! Sounds like you did too!!!